Package index • omopHeor

Stage 1: Cohort Generation

Functions for defining, initializing, and building care episodes.

init(): Initialize an omopHeor study (Stage 1: Cohort Generation) (from CohortEconomics)
compute_hospitalization_cohorts() computeHospitalizationCohorts(): Generate Hospitalization and Readmission Cohorts (Stage 1 & 2) (from CohortUtilisation)
computeInfusionCohorts(): Create Infusion Administration Episode Cohorts (from CohortUtilisation)

In-database cohort enrichment verbs following PatientProfiles patterns.

addInpatients() addHospitalizations() addInpatient() addIcuStays(): Add Inpatient and ICU Hospitalization Metrics to a Cohort (from CohortUtilisation)
addEmergencyCare() addEmergency() addEmergencyVisits(): Add Emergency Care Utilization Metrics to a Cohort (from CohortUtilisation)
addOutpatientVisits(): Add Outpatient and Emergency Visits to a Cohort (from CohortUtilisation)
addVisits(): Add Multi-Setting Visit Utilization Metrics to a Cohort (from CohortUtilisation)
addPrescriptions(): Add Prescription and Medication Metrics to a Cohort (from CohortUtilisation)
addProcedures(): Add Diagnostic Measurements and Procedure Occurrences to a Cohort (from CohortUtilisation)
addCosts(): Add Direct Medical Costs to a Cohort (from CohortCosts)

Standardised result summaries and publication-ready table & plot formatters.

summariseUtilization(): Summarise Healthcare Resource Utilization for a Cohort (from CohortUtilisation)
summariseCosts(): Summarise Direct Medical Costs for a Cohort (from CohortCosts)
tableUtilization(): Format Summarised Utilization as a Table (from CohortUtilisation)
tableCosts(): Format Summarised Direct Costs as a Table (from CohortCosts)
plotUtilization(): Plot Summarised Healthcare Resource Utilization (from CohortUtilisation)
plotCosts(): Plot Summarised Direct Medical Costs (from CohortCosts)
summarise_baseline(): Summarise baseline demographics and comorbidities (Stage 2: Baseline) (from CohortEconomics)
extract_hcru() extractHcru(): Extract Healthcare Resource Utilization (HCRU) from OMOP CDM (Stage 2: HCRU) (from CohortEconomics)

Causal adjustment and matching.

fit_ps(): Fit Propensity Score Model (Stage 3: Causal Adjustment) (from CohortEconomics)
adjust_ps(): Adjust Propensity Scores (Stage 3: Causal Adjustment) (from CohortEconomics)
assess_balance(): Assess Covariate Balance (Stage 3: Causal Adjustment) (from CohortEconomics)

State-cost extraction and transitions.

compile_trajectories(): Compile State Trajectories and Costs (Stage 4: Trajectory Compilation) (from CohortEconomics)

Economic simulation and decision analysis.

simulate_economics(): Simulate Economic Outcomes (Stage 5: Economic Simulation) (from CohortEconomics)
run_cea(): Run Cost-Effectiveness Analysis (Stage 6: Decision Analysis) (from CohortEconomics)
plot_ceac(): Plot Cost-Effectiveness Acceptability Curve (CEAC) (from CohortEconomics)
plot_plane(): Plot Cost-Effectiveness Plane (from CohortEconomics)
table_summary(): Summary Table (from CohortEconomics)

Helpers for creating synthetic in-memory OMOP CDM test references.

mockOmopHeor() mockHERMES(): Create a Mock OMOP CDM Reference for Testing and Demonstrations